Close In Europe in May? Come to Croatia for MIPRO 2014 for an all-day workshop on doing data analysis with Galaxy CloudMan.
Papers
  • Afgan, E., Coraor, N., Chilton, J., Baker, D., Taylor J., "Enabling Cloud Bursting for Life Sciences within Galaxy", Concurrency and Computation: Practice and Experience, In press.
  • Afgan, E., Krampis, K., Goonasekera, N., Skala, K., Taylor, J., "Building and Provisioning Bioinformatics Environments on Public and Private Clouds”, 38th International Convention on Information and Communication Technology, Electronics and Microelectronics (MIPRO), Opatija, Croatia, IEEE, May 2015. [link]
  • Afgan, E., Baker, D., Chilton, J., Coraor, N., Taylor, J., "Galaxy Cluster to Cloud - Genomics at Scale", The 9th Gateway Computing Environments Workshop at SC14 (Int. Conference for High Performance, Networking, Storage and Analysis), New Orleans, LA, pp. 47-50, November 2014. [link]
  • Forer, L., Lipić, T., Schönherr, S., Weißensteiner, H., Davidović, D., Kronenberg, F., Afgan, E., “Delivering bioinformatics MapReduce applications in the cloud”, 37th International Convention on Information and Communication Technology, Electronics and Microelectronics (MIPRO), Opatija, Croatia, IEEE, May 2014. [link]
  • Sloggett C., Goonasekera N., Afgan E., "BioBlend: automating pipeline analyses within Galaxy and CloudMan," Bioinformatics, Vol 29, 2013. [PDF]
  • Kowsar Y., Afgan E., "Support for data-intensive computing with CloudMan," 36th International Convention on Information and Communication Technology, Electronics and Microelectronics (MIPRO), Opatija, Croatia, IEEE, May 2013. [PDF]
  • Afgan E., Chapman B., Taylor J., "CloudMan as a platform for tool, data, and analysis distribution," BMC Bioinformatics, 13:315, 2012. [Open Access]
  • Afgan E., Chapman B., Jadan M., Franke V., Taylor J., "Using Cloud Computing Infrastructure with CloudBioLinux, CloudMan, and Galaxy," Current Protocols in Bioinformatics, Unit 11.9, 2012. [Open Access]
  • Afgan E., Baker D., Coraor N., Goto H., Paul I.M, Makova K.D., Nekrutenko A., Taylor J., "Harnessing cloud computing with Galaxy Cloud," Nature Biotechnology, Vol 29, Issue 11, 2011. [NB]
  • Afgan E., Baker D., Taylor J., “A Reference Model for Deploying Applications in Virtualized Environments,” Concurrency and Computation: Practice and Experience, first published online, 2011. [CCPE]
  • Goto H., Dickins B., Afgan E., Paul I. M., Taylor J., Makova K. D., and Nekrutenko A., "Dynamics of mitochondrial heteroplasmy in three families investigated via a repeatable re-sequencing study," Genome Biology, vol. 12, issue R59, 2011. [Open Access]
  • Afgan E., Goecks J., Baker D., Coraor N., the Galaxy Team, Nekrutenko A., and Taylor J., "Galaxy - a Gateway to Tools in e-Science," in Guide to e-Science: Next Generation Scientific Research and Discovery , K. Yang, Ed., ed: Springer, 2011, p. 145-177. [PDF] [Book]
  • Afgan E., Baker D., Coraor N., Chapman B., Nekrutenko A., Taylor J., "Galaxy CloudMan: Delivering Cloud Compute Clusters," BMC Bioinformatics, Vol 11, Issue 12, 2010. [PDF]
Presentations